results
Defines the creation of result data structures.
plot_roi_boundaries
plot_roi_boundaries (roi:Union[neuralactivitycubic.input.ROI,neuralactivi tycubic.analysis.AnalysisROI], line_color:str, line_style:str, line_width:Union[int,float])
plot_window_size_preview
plot_window_size_preview (preview_image:numpy.ndarray, grid_configs:Dict[str,Any], focus_area_roi:Opti onal[neuralactivitycubic.input.ROI]=None)
plot_activity_overview
plot_activity_overview (analysis_rois_with_sufficient_activity:Union[List [neuralactivitycubic.analysis.AnalysisROI],List], preview_image:numpy.ndarray, indicate_activity:bool=False, focus_area:Optional [neuralactivitycubic.input.ROI]=None, grid_configs:Optional[Dict[str,Any]]=None)
Type | Default | Details | |
---|---|---|---|
analysis_rois_with_sufficient_activity | Union | With python 3.11 - change back to: List[Never] | |
preview_image | ndarray | ||
indicate_activity | bool | False | |
focus_area | Optional | None | |
grid_configs | Optional | None | |
Returns | Tuple |
plot_rois_with_label_id_overview
plot_rois_with_label_id_overview (analysis_rois_with_sufficient_activity: Union[List[neuralactivitycubic.analysis .AnalysisROI],List], preview_image:numpy.ndarray, focus_area :Optional[neuralactivitycubic.input.ROI ]=None, grid_configs:Optional[Dict[str, Any]]=None)
Type | Default | Details | |
---|---|---|---|
analysis_rois_with_sufficient_activity | Union | With python 3.11 - change back to: List[Never] | |
preview_image | ndarray | ||
focus_area | Optional | None | |
grid_configs | Optional | None | |
Returns | Tuple |
plot_intensity_trace_with_identified_peaks_for_individual_roi
plot_intensity_trace_with_identified_peaks_for_individual_roi (analysis_ roi:neural activitycu bic.analys is.Analysi sROI)
export_peak_results_df_from_analysis_roi
export_peak_results_df_from_analysis_roi (analysis_roi:neuralactivitycub ic.analysis.AnalysisROI)
create_single_roi_amplitude_and_delta_f_over_f_results
create_single_roi_amplitude_and_delta_f_over_f_results (df_all_results_s ingle_roi:pandas. core.frame.DataFr ame, zfill_factor:int)
create_single_roi_auc_results
create_single_roi_auc_results (df_all_results_single_roi:pandas.core.fra me.DataFrame, zfill_factor:int)